Hobbes Genome Sequence Mapping Information Systems Group Institute for Genomics and Bioinformatics Bren School of ICSUC Irvine

Hobbes 1.3 Source Code

Hobbes Source Code
License

Please consult the manual for system requirements and compilation instructions.

Hobbes Pre-Built Indexes

Hg18

Hg18 Reference Sequence, originally from UCSC
Hg18 Hobbes Index, 16-bit bitvector (17GB)
Hg18 Hobbes Index, 32-bit bitvector (22GB)

Hg19

Hg19 Reference Sequence, originally from UCSC
Hg19 Hobbes Index, 16-bit bitvector (17GB)
Hg19 Hobbes Index, 32-bit bitvector (22GB)

Mouse mm9 37

Mouse Reference Sequence, originally from UCSC
Mouse Hobbes Index, 16-bit bitvector (15GB)
Mouse Hobbes Index, 32-bit bitvector (20GB)

Fly Drosophila dm3

Fly Reference Sequence, originally from UCSC
Fly Hobbes Index, 16-bit bitvector (1GB)
Fly Hobbes Index, 32-bit bitvector (1GB)

Release History

Version 1.3 Source (February 03, 2012), Fixed a bug in the Bowtie-Like output format

Version 1.3 Source (January 23, 2012)

Version 1.3 (November 01, 2011)

Version 1.2 (September 01, 2011)

Version 1.1 (July 15, 2011)

Version 1.0 (March 31, 2011)